PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g027650.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YB
Protein Properties Length: 209aa    MW: 23679.1 Da    PI: 7.9582
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g027650.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.26.4e-5524119297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfedyv plk+yl+kyre
  Solyc12g027650.1.1  24 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITILGFEDYVLPLKQYLNKYRE 114
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         legek
  Solyc12g027650.1.1 115 LEGEK 119
                         **996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.0E-5123133IPR009072Histone-fold
SuperFamilySSF471133.26E-3926132IPR009072Histone-fold
PfamPF008083.9E-282993IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-185775No hitNo description
PROSITE patternPS0068506076IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-187694No hitNo description
PRINTSPR006152.2E-1895113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEDERGGNCA ESSSSTLMPM PMNKEQDRFL PIANVGRIMK KVIPGNGKIS KDAKETVQEC  60
VSEFISFVTG EASDKCQREK RKTINGDDII WAITILGFED YVLPLKQYLN KYRELEGEKL  120
NVPKHVNQQQ QQHAADQIKP NFSYNTTTTV YSPTPLLPQT SFVPTDQPFP LPFSPNSQLP  180
KQEHLDSMGH WMIRRSKFPC LGRMAIIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4324114292Transcription factor HapC (Eurofung)
4g92_B7e-4324114292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314139.11e-143PREDICTED: nuclear transcription factor Y subunit B-7
SwissprotQ9SIT94e-69NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLK4DDT51e-157K4DDT5_SOLLC; Uncharacterized protein
STRINGSolyc12g027650.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-68nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]